STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2823KEGG: rrs:RoseRS_1532 PT repeat-containing protein. (386 aa)    
Predicted Functional Partners:
Caur_1388
PFAM: Na-Ca exchanger/integrin-beta4; KEGG: afw:Anae109_2925 hypothetical protein.
  
 
 0.835
Caur_0464
PFAM: VanW family protein; KEGG: rca:Rcas_2379 VanW family protein.
  
     0.623
Caur_1301
PFAM: VanW family protein; KEGG: rca:Rcas_0036 VanW family protein.
  
     0.619
Caur_1055
PFAM: VanW family protein; KEGG: rrs:RoseRS_0768 VanW family protein.
  
     0.605
Caur_1765
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_1714 cell envelope-related transcriptional attenuator.
  
     0.480
Caur_0482
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_0131 cell envelope-related transcriptional attenuator.
  
     0.457
Caur_0190
KEGG: rrs:RoseRS_1536 hypothetical protein.
 
     0.453
Caur_2834
PFAM: peptidase C60 sortase A and B; KEGG: rca:Rcas_3681 peptidase C60 sortase A and B.
 
     0.445
Caur_3884
KEGG: rrs:RoseRS_4300 hypothetical protein.
 
 
   0.444
Caur_2822
KEGG: rrs:RoseRS_3312 hypothetical protein.
  
    0.443
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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