STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2869TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: cph:Cpha266_0291 nucleotidyltransferase substrate binding protein, HI0074 family. (141 aa)    
Predicted Functional Partners:
Caur_2868
PFAM: DNA polymerase beta domain protein region; KEGG: cph:Cpha266_0292 DNA polymerase, beta domain protein region.
     0.967
Caur_3076
TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: rrs:RoseRS_3506 nucleotidyltransferase substrate binding protein, HI0074 family.
 
     0.781
Caur_3077
PFAM: DNA polymerase beta domain protein region; KEGG: rrs:RoseRS_3505 DNA polymerase, beta domain protein region.
 
     0.610
Caur_1899
PFAM: DNA polymerase beta domain protein region; KEGG: rrs:RoseRS_2935 DNA polymerase, beta domain protein region.
 
     0.550
Caur_2870
TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ter:Tery_1075 phenazine biosynthesis protein PhzF family.
       0.507
Caur_1574
PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_4529 protein of unknown function DUF86.
 
     0.463
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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