STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3072PFAM: glycosyl hydrolase 53 domain protein; KEGG: rrs:RoseRS_1096 hypothetical protein. (560 aa)    
Predicted Functional Partners:
Caur_3551
KEGG: cya:CYA_0302 hypothetical protein.
   
   0.851
Caur_2800
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3504 allergen V5/TPX-1 family protein.
 
 
 0.768
Caur_1070
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: rca:Rcas_2514 tagatose-bisphosphate aldolase.
 
  
 0.728
Caur_2051
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
     0.712
Caur_0711
KEGG: rrs:RoseRS_2657 hypothetical protein.
  
     0.706
Caur_1864
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rca:Rcas_2671 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
  
     0.695
Caur_2637
KEGG: rrs:RoseRS_4324 hypothetical protein.
 
     0.694
Caur_0710
KEGG: rca:Rcas_1943 membrane protein-like protein.
  
     0.680
Caur_2750
KEGG: rrs:RoseRS_2803 chromosome segregation ATPase-like protein.
  
     0.668
Caur_0611
KEGG: rrs:RoseRS_0120 TPR repeat-containing protein.
  
    0.664
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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