STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3166PFAM: DSBA oxidoreductase; KEGG: rca:Rcas_3717 DsbA oxidoreductase. (262 aa)    
Predicted Functional Partners:
Caur_0467
PFAM: Disulphide bond formation protein DsbB; KEGG: rca:Rcas_2051 disulphide bond formation protein DsbB; Belongs to the DsbB family.
 
 
 0.732
Caur_3164
PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: drm:Dred_0353 alpha/beta hydrolase fold.
       0.430
Caur_3165
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rrs:RoseRS_0192 transcriptional coactivator/pterin dehydratase.
       0.430
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity.
     
 0.400
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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