STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3191PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2704 von Willebrand factor, type A. (845 aa)    
Predicted Functional Partners:
Caur_3190
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2703 hypothetical protein.
 
     0.957
Caur_3409
TIGRFAM: conserved hypothetical membrane protein; SMART: von Willebrand factor type A; KEGG: rrs:RoseRS_1890 hypothetical protein.
     0.931
Caur_3189
KEGG: rrs:RoseRS_2702 hypothetical protein.
 
    0.897
Caur_0480
KEGG: rca:Rcas_0864 hypothetical protein.
 
 
   0.819
Caur_0970
KEGG: rca:Rcas_0864 hypothetical protein.
 
 
   0.818
Caur_3411
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1889 protein of unknown function DUF58.
 
    0.813
Caur_0478
KEGG: rrs:RoseRS_2418 hypothetical protein.
 
     0.809
Caur_2041
PFAM: ABC-2 type transporter; KEGG: rca:Rcas_3060 hypothetical protein.
 
     0.809
Caur_3413
KEGG: rrs:RoseRS_1886 hypothetical protein.
  
     0.774
Caur_0969
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_3059 ABC transporter related.
 
     0.763
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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