STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3200KEGG: rca:Rcas_2174 uncharacterized component of anaerobic dehydrogenase-like protein. (312 aa)    
Predicted Functional Partners:
Caur_3201
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rca:Rcas_2173 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.965
Caur_3202
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Polysulphide reductase NrfD; KEGG: rca:Rcas_2172 cyclic nucleotide-binding protein.
 
  
 0.952
Caur_2916
SMART: Pyrrolo-quinoline quinone; KEGG: rca:Rcas_0596 pyrrolo-quinoline quinone.
  
     0.742
Caur_3770
PFAM: Laminin G sub domain 2; SMART: Laminin G; LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_0555 laminin G sub domain 2.
  
     0.734
Caur_3755
KEGG: rca:Rcas_0453 hypothetical protein.
  
     0.705
Caur_3504
SMART: LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_2574 LamG domain protein jellyroll fold domain protein.
  
     0.698
Caur_0025
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: deh:cbdb_A118 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.696
Caur_3769
KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
  
     0.694
Caur_0537
KEGG: rrs:RoseRS_1123 LamG domain protein jellyroll fold domain protein.
  
     0.692
Caur_3771
SMART: Laminin G; KEGG: rrs:RoseRS_3871 laminin G, sub domain 2.
  
     0.686
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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