STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3238TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4004 polar amino acid ABC transporter, inner membrane subunit. (400 aa)    
Predicted Functional Partners:
Caur_3239
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_1456 polar amino acid ABC transporter, inner membrane subunit.
 
0.999
Caur_3240
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_0933 polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein.
 
 
 0.988
Caur_3237
SMART: extracellular solute-binding protein family 3; KEGG: rrs:RoseRS_4005 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.981
Caur_3172
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rca:Rcas_3278 extracellular solute-binding protein family 3.
 
  
 0.813
Caur_0772
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein.
  
     0.444
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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