STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3239TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_1456 polar amino acid ABC transporter, inner membrane subunit. (410 aa)    
Predicted Functional Partners:
Caur_3238
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4004 polar amino acid ABC transporter, inner membrane subunit.
 
0.999
Caur_3240
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_0933 polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein.
 0.999
Caur_3237
SMART: extracellular solute-binding protein family 3; KEGG: rrs:RoseRS_4005 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.989
Caur_3172
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rca:Rcas_3278 extracellular solute-binding protein family 3.
 
 0.974
Caur_3258
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rca:Rcas_1903 glutamate synthase (ferredoxin).
  
  
 0.541
Caur_3449
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related.
   
 0.514
Caur_1027
PFAM: extracellular solute-binding protein family 5; KEGG: deb:DehaBAV1_0943 extracellular solute-binding protein, family 5.
  
 
 0.481
Caur_3544
PFAM: argininosuccinate synthase; KEGG: bmn:BMA10247_2224 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
  
  
 0.476
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: rrs:RoseRS_2403 argininosuccinate lyase.
  
  
 0.451
Caur_0194
PFAM: ABC-3 protein; KEGG: rca:Rcas_1721 transcriptional regulator, MarR family.
   
 
 0.447
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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