STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3249PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3119 peptidase C60, sortase A and B. (310 aa)    
Predicted Functional Partners:
Caur_1608
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.765
Caur_1679
KEGG: rrs:RoseRS_3713 hypothetical protein.
  
     0.765
Caur_2608
KEGG: rrs:RoseRS_3023 hypothetical protein.
  
     0.747
Caur_2644
KEGG: rca:Rcas_0803 N-acetylglucosamine-1-phosphate uridyltransferase-like protein.
  
     0.745
Caur_2800
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3504 allergen V5/TPX-1 family protein.
 
    0.744
Caur_1680
KEGG: rrs:RoseRS_4040 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.743
Caur_1339
PFAM: TPR repeat-containing protein; glycosyl transferase family 39; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
     0.727
Caur_3318
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
  
     0.724
Caur_2051
KEGG: rrs:RoseRS_2563 hypothetical protein.
 
     0.721
Caur_2549
KEGG: rrs:RoseRS_0243 glycosyl transferase, family 39.
  
     0.713
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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