Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_3252KEGG: rca:Rcas_4272 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Caur_3254
PFAM: conserved hypothetical protein; KEGG: rca:Rcas_4270 hypothetical protein.
 
  
 0.832
Caur_3253
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_3583 glycosyl transferase, group 1.
  
    0.784
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.731
Caur_1515
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
  
 0.687
Caur_2613
PFAM: cytochrome P450; KEGG: fra:Francci3_4464 cytochrome P450.
  
 0.687
Caur_0971
KEGG: rca:Rcas_0863 hypothetical protein.
  
     0.666
Caur_3257
KEGG: rrs:RoseRS_3578 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.658
Caur_0736
Hypothetical protein.
  
     0.644
Caur_2614
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rca:Rcas_2929 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.637
Caur_0643
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rca:Rcas_4065 methyltransferase type 11.
  
   
 0.636
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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