STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3268PFAM: Abortive infection protein; KEGG: sen:SACE_6350 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Caur_3267
PFAM: protein of unknown function DUF1648; KEGG: ckl:CKL_2435 hypothetical protein.
 
     0.733
Caur_3266
PFAM: regulatory protein ArsR; KEGG: pth:PTH_1500 predicted transcriptional regulator.
 
     0.726
Caur_0675
PFAM: band 7 protein; KEGG: rrs:RoseRS_0384 band 7 protein.
 
    0.601
Caur_3756
KEGG: rrs:RoseRS_4226 membrane protein-like protein.
  
    0.524
Caur_1437
KEGG: stp:Strop_3843 hypothetical protein.
  
    0.474
Caur_3269
KEGG: mbn:Mboo_0664 hypothetical protein.
       0.403
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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