STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3333KEGG: rrs:RoseRS_2661 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Caur_3334
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2662 adenylyl cyclase class-3/4/guanylyl cyclase.
       0.791
Caur_3332
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_1528 PBS lyase heat domain protein repeat-containing protein.
       0.568
Caur_3330
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL2907 putative short chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.515
Caur_3331
PFAM: ribonucleotide reductase; KEGG: rca:Rcas_3780 ribonucleotide reductase.
       0.515
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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