STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3382KEGG: rca:Rcas_2682 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Caur_3381
KEGG: rrs:RoseRS_3020 transcriptional regulator-like protein.
       0.773
Caur_3380
TIGRFAM: CRISPR-associated protein, TIGR02710 family; PFAM: CRISPR-associated protein Cas02710; KEGG: rrs:RoseRS_3021 hypothetical protein.
       0.661
Caur_3379
KEGG: rrs:RoseRS_0370 hypothetical protein.
       0.643
Caur_3377
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rxy:Rxyl_2629 two component transcriptional regulator, LuxR family.
       0.416
Caur_3378
PFAM: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase.
       0.416
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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