STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3403PFAM: acriflavin resistance protein; KEGG: rrs:RoseRS_4303 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1100 aa)    
Predicted Functional Partners:
Caur_3402
PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_0268 efflux transporter, RND family, MFP subunit.
 
 
 0.981
Caur_0998
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_0268 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.941
Caur_1168
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_1203 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.940
Caur_2119
PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_3638 secretion protein HlyD family protein.
  
 
 0.924
Caur_3752
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_0460 hypothetical protein.
  
 
 0.883
Caur_3404
KEGG: rrs:RoseRS_1832 hypothetical protein.
       0.549
Caur_3405
KEGG: rca:Rcas_2511 hypothetical protein.
       0.549
Caur_1789
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein.
 
 
 
 0.504
Caur_3401
PFAM: regulatory protein TetR; KEGG: rrs:RoseRS_4304 transcriptional regulator, TetR family.
     
 0.493
Caur_3071
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rca:Rcas_2042 GAF modulated sigma54 specific transcriptional regulator, Fis family.
  
   
 0.469
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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