Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_3404KEGG: rrs:RoseRS_1832 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Caur_3405
KEGG: rca:Rcas_2511 hypothetical protein.
       0.819
Caur_0611
KEGG: rrs:RoseRS_0120 TPR repeat-containing protein.
  
     0.749
Caur_1608
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.743
Caur_3910
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1836 protein of unknown function DUF58.
 
     0.721
Caur_2051
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
     0.717
Caur_2658
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: rrs:RoseRS_2026 metal dependent phosphohydrolase.
  
     0.715
Caur_1089
KEGG: rrs:RoseRS_1205 hypothetical protein.
  
     0.708
Caur_2669
KEGG: rrs:RoseRS_2363 hypothetical protein.
  
     0.703
Caur_0507
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_3801 protein of unknown function DUF95, transmembrane.
  
     0.693
Caur_0712
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.689
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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