STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3441KEGG: rrs:RoseRS_0848 hypothetical protein. (551 aa)    
Predicted Functional Partners:
Caur_3440
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_0849 methyltransferase type 11.
       0.818
Caur_3439
KEGG: rca:Rcas_3885 hypothetical protein.
       0.757
Caur_3443
PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3891 glycosyl transferase group 1.
       0.753
Caur_3442
KEGG: rrs:RoseRS_4300 hypothetical protein.
       0.752
Caur_3444
PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3892 glycosyl transferase group 1.
       0.632
Caur_3438
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rrs:RoseRS_1374 GHMP kinase.
       0.503
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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