STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3477PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_3881 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Caur_1088
PFAM: cell wall hydrolase/autolysin; KEGG: rci:RCIX660 hypothetical protein.
 
   0.899
Caur_3476
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3810 methyltransferase type 11.
 
     0.833
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.746
Caur_3418
PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rrs:RoseRS_0983 sec-independent translocation protein MttA/Hcf106.
   
 
 0.746
Caur_0971
KEGG: rca:Rcas_0863 hypothetical protein.
  
  
 0.712
Caur_1679
KEGG: rrs:RoseRS_3713 hypothetical protein.
  
     0.660
Caur_1680
KEGG: rrs:RoseRS_4040 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.657
Caur_1339
PFAM: TPR repeat-containing protein; glycosyl transferase family 39; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
     0.647
Caur_1589
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rca:Rcas_1668 protein of unknown function DUF95 transmembrane.
 
     0.632
Caur_1612
KEGG: rrs:RoseRS_1607 hypothetical protein.
  
   
 0.631
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.