Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_3523KEGG: rca:Rcas_0227 hypothetical protein. (142 aa)    
Predicted Functional Partners:
Caur_3522
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.752
Caur_3521
KEGG: rca:Rcas_0225 hypothetical protein.
       0.690
Caur_3520
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mxa:MXAN_3956 putative adenylate cyclase.
       0.607
Caur_3524
PFAM: Propeptide PepSY amd peptidase M4; KEGG: rca:Rcas_0228 propeptide PepSY amd peptidase M4.
       0.512
Caur_3525
KEGG: rca:Rcas_0224 hypothetical protein.
       0.427
Caur_3519
KEGG: rrs:RoseRS_0257 hypothetical protein.
       0.415
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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