Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_3540KEGG: rca:Rcas_3039 hypothetical protein. (908 aa)    
Predicted Functional Partners:
Caur_3318
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
  
     0.752
Caur_2051
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
     0.729
Caur_2549
KEGG: rrs:RoseRS_0243 glycosyl transferase, family 39.
  
     0.725
Caur_1864
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rca:Rcas_2671 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
  
     0.708
Caur_1339
PFAM: TPR repeat-containing protein; glycosyl transferase family 39; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
     0.677
Caur_1608
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
 
     0.659
Caur_2822
KEGG: rrs:RoseRS_3312 hypothetical protein.
  
     0.655
Caur_0711
KEGG: rrs:RoseRS_2657 hypothetical protein.
  
     0.651
Caur_0430
TIGRFAM: conserved repeat domain protein; KEGG: rca:Rcas_1728 conserved repeat domain.
  
     0.637
Caur_2800
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3504 allergen V5/TPX-1 family protein.
 
    0.637
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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