STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Caur_3543PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0221 anti-sigma-factor antagonist. (364 aa)    
Predicted Functional Partners:
Caur_1013
PFAM: cyclic nucleotide-binding; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_4027 cyclic nucleotide-binding protein.
  
 
 0.890
Caur_0458
PFAM: ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_2297 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
   0.863
Caur_2665
PFAM: ATP-binding region ATPase domain protein; KEGG: rca:Rcas_0675 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
   0.863
Caur_0459
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2296 stage II sporulation E family protein.
 
   0.856
Caur_3274
PAS sensor protein; KEGG: sfu:Sfum_0942 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
  
  
 0.672
Caur_3542
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0135 anti-sigma-factor antagonist.
 
    
0.523
Caur_3534
Diguanylate cyclase; KEGG: ava:Ava_2710 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.438
Caur_2611
PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rca:Rcas_2849 protein serine phosphatase with GAF(s) sensor(s).
  
 
 0.434
Caur_1060
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_1195 anti-sigma-factor antagonist.
   
   0.416
Caur_1205
PFAM: ATP-binding region ATPase domain protein; KEGG: sen:SACE_4200 regulator of sigma factor.
   
   0.416
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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