STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3551KEGG: cya:CYA_0302 hypothetical protein. (346 aa)    
Predicted Functional Partners:
Caur_2468
KEGG: rrs:RoseRS_3210 protein of unknown function DUF11.
   
   0.851
Caur_3072
PFAM: glycosyl hydrolase 53 domain protein; KEGG: rrs:RoseRS_1096 hypothetical protein.
   
   0.851
Caur_3552
KEGG: rxy:Rxyl_2987 hypothetical protein.
       0.825
Caur_3550
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_3594 glycosyl transferase, group 1.
       0.773
Caur_3549
PFAM: protein of unknown function DUF540; KEGG: rrs:RoseRS_3441 protein of unknown function DUF540.
       0.675
Caur_0886
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rca:Rcas_0212 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
 
     0.516
Caur_0597
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rca:Rcas_2232 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
    0.468
Caur_2822
KEGG: rrs:RoseRS_3312 hypothetical protein.
  
     0.467
Caur_2862
KEGG: rha:RHA1_ro05154 hypothetical protein.
  
     0.424
Caur_2131
PFAM: Methyltransferase type 11; Ribosomal small subunit Rsm22; KEGG: aba:Acid345_3030 hypothetical protein.
  
     0.420
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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