STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3580PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rca:Rcas_1187 beta-lactamase domain protein. (394 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.971
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.947
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.928
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.921
Caur_1324
PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rca:Rcas_2316 transcriptional regulator, ArsR family.
 
 
 0.913
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
   0.902
Caur_2131
PFAM: Methyltransferase type 11; Ribosomal small subunit Rsm22; KEGG: aba:Acid345_3030 hypothetical protein.
    
   0.898
Caur_3896
PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: bld:BLi02785 putative hydrolase; RBL03501.
 
 
0.886
Caur_0225
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rca:Rcas_1187 beta-lactamase domain protein.
 
 
0.850
Caur_0732
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rrs:RoseRS_2401 protein tyrosine phosphatase.
  
   0.850
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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