STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3602PFAM: UspA domain protein; KEGG: tth:TTC1218 transcriptional regulator. (605 aa)    
Predicted Functional Partners:
Caur_3886
PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_2061 hypothetical protein.
     0.807
RadC
PFAM: DNA repair protein RadC; KEGG: rca:Rcas_0037 DNA repair protein RadC; Belongs to the UPF0758 family.
       0.568
Caur_0222
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rba:RB5051 conserved hypothetical protein-putative thioredoxin reductase.
  
  
 0.507
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.490
Caur_0536
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0088 amine oxidase.
  
     0.454
Caur_3475
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0780 glycosyl transferase, group 1.
  
     0.452
Caur_0894
ATP-binding region ATPase domain protein; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0204 integral membrane sensor hybrid histidine kinase.
  
  
 0.433
Caur_3790
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_3973 amine oxidase.
  
     0.432
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.418
Caur_1740
KEGG: rrs:RoseRS_2676 glycosyl transferase, group 1.
  
     0.412
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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