Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_3744KEGG: rca:Rcas_2037 putative transmembrane anti-sigma factor. (294 aa)    
Predicted Functional Partners:
Caur_3743
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.906
Caur_2353
KEGG: rrs:RoseRS_2152 hypothetical protein.
  
     0.678
Caur_3374
KEGG: rrs:RoseRS_3020 transcriptional regulator-like protein.
  
     0.664
Caur_3381
KEGG: rrs:RoseRS_3020 transcriptional regulator-like protein.
  
     0.636
Caur_1860
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.625
Caur_1608
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.602
Caur_0636
PFAM: iron permease FTR1; KEGG: rca:Rcas_0820 iron permease FTR1.
  
     0.601
Caur_0502
KEGG: rrs:RoseRS_2561 glucose-6-P dehydrogenase subunit-like protein.
  
     0.570
Caur_3560
KEGG: rrs:RoseRS_2127 uncharacterized metal-binding protein-like protein.
  
     0.558
Caur_0949
KEGG: rrs:RoseRS_2630 hypothetical protein.
  
     0.534
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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