STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3752TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_0460 hypothetical protein. (523 aa)    
Predicted Functional Partners:
Caur_0823
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_1075 protein of unknown function DUF214.
 
 
 0.884
Caur_3403
PFAM: acriflavin resistance protein; KEGG: rrs:RoseRS_4303 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.831
Caur_3751
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: rrs:RoseRS_4218 histidinol-phosphate phosphatase family protein.
     
 0.805
Caur_1169
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_1126 protein of unknown function DUF214.
 
 
 0.803
Caur_0996
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_0266 protein of unknown function DUF214.
 
 
 0.797
Caur_3753
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_4219 lipopolysaccharide biosynthesis protein.
       0.780
Caur_3754
KEGG: rca:Rcas_0452 hypothetical protein.
       0.764
Caur_3755
KEGG: rca:Rcas_0453 hypothetical protein.
       0.671
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.648
Caur_0997
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0267 ABC transporter related.
 
 
 0.607
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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