STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3771SMART: Laminin G; KEGG: rrs:RoseRS_3871 laminin G, sub domain 2. (437 aa)    
Predicted Functional Partners:
Caur_3775
KEGG: rca:Rcas_3968 hypothetical protein.
 
     0.915
Caur_3774
PFAM: AMP-dependent synthetase and ligase; KEGG: rca:Rcas_3967 AMP-dependent synthetase and ligase.
 
     0.834
Caur_3773
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_1126 short-chain dehydrogenase/reductase SDR.
 
     0.831
Caur_3769
KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
     0.822
Caur_3770
PFAM: Laminin G sub domain 2; SMART: Laminin G; LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_0555 laminin G sub domain 2.
 
    
0.821
Caur_3772
KEGG: rca:Rcas_3965 hypothetical protein.
       0.808
Caur_3783
KEGG: rca:Rcas_0468 hypothetical protein.
 
     0.775
Caur_2916
SMART: Pyrrolo-quinoline quinone; KEGG: rca:Rcas_0596 pyrrolo-quinoline quinone.
  
     0.772
Caur_2536
PFAM: Alkaline phosphatase; KEGG: rrs:RoseRS_1990 alkaline phosphatase.
  
     0.770
Caur_2353
KEGG: rrs:RoseRS_2152 hypothetical protein.
  
     0.751
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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