STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3795PFAM: protein of unknown function DUF344; KEGG: rca:Rcas_2786 protein of unknown function DUF344. (544 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.841
Caur_3794
KEGG: rrs:RoseRS_2930 hypothetical protein.
       0.774
Caur_3425
PFAM: Ppx/GppA phosphatase; KEGG: rrs:RoseRS_0819 Ppx/GppA phosphatase.
 
  
 0.771
Caur_3793
PFAM: AMP-dependent synthetase and ligase; KEGG: bcz:BCZK2688 long-chain-fatty-acid--CoA ligase.
       0.566
Caur_0209
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.511
Caur_0644
KEGG: bxe:Bxe_A0855 oxygen-independent coproporphyrinogen III oxidase HemN; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.511
Caur_0397
KEGG: rca:Rcas_0802 4-vinyl reductase 4VR.
   
    0.462
Caur_3390
PFAM: protein of unknown function DUF55; KEGG: rca:Rcas_2368 protein of unknown function DUF55.
   
    0.462
Caur_3677
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR; KEGG: rca:Rcas_1582 bacteriochlorophyll 4-vinyl reductase.
   
    0.462
Caur_3919
KEGG: rru:Rru_A0614 hypothetical protein.
   
    0.462
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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