STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3853KEGG: mhu:Mhun_2817 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Caur_3852
KEGG: mhu:Mhun_2816 hypothetical protein.
 
     0.956
Caur_3854
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_0960 two component transcriptional regulator, winged helix family.
       0.773
Caur_0569
KEGG: mla:Mlab_0294 hypothetical protein.
 
     0.738
Caur_3855
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_3486 integral membrane sensor signal transduction histidine kinase.
       0.735
Caur_3219
PFAM: YD repeat-containing protein; KEGG: rrs:RoseRS_1682 YD repeat protein.
  
     0.558
Caur_3134
KEGG: mac:MA2043 hypothetical protein.
  
     0.437
Caur_3851
KEGG: rrs:RoseRS_1079 hypothetical protein.
       0.418
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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