STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3884KEGG: rrs:RoseRS_4300 hypothetical protein. (824 aa)    
Predicted Functional Partners:
Caur_3525
KEGG: rca:Rcas_0224 hypothetical protein.
  
 
 0.845
Caur_3882
PFAM: biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 putative lipoate protein ligase.
       0.825
Caur_3883
KEGG: lin:lin2753 hypothetical protein.
       0.825
Caur_2637
KEGG: rrs:RoseRS_4324 hypothetical protein.
 
 
   0.806
Caur_2800
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3504 allergen V5/TPX-1 family protein.
 
     0.786
Caur_2051
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
    0.781
Caur_3594
KEGG: rca:Rcas_3061 hypothetical protein.
 
    0.779
Caur_0711
KEGG: rrs:RoseRS_2657 hypothetical protein.
 
     0.778
Caur_1339
PFAM: TPR repeat-containing protein; glycosyl transferase family 39; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
 
     0.778
Caur_2707
KEGG: rca:Rcas_4414 metallophosphoesterase.
 
     0.775
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.