STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col1a2Collagen, type I, alpha 2. (1346 aa)    
Predicted Functional Partners:
Itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.726
Itgb3
Uncharacterized protein.
    
 0.702
Itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.701
ENSXCOP00000026644
Integrin beta; Belongs to the integrin beta chain family.
    
 0.701
Itgb6
Integrin beta.
    
 0.699
ENSXCOP00000013306
Uncharacterized protein.
    
 0.695
Itga2b
Uncharacterized protein.
    
 0.695
ENSXCOP00000019235
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.695
Itga10
Integrin, alpha 10; Belongs to the integrin alpha chain family.
     
 0.695
Itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.695
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.