ENSXCOP00000002021 protein (Xiphophorus couchianus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSXCOP00000002021

Microtubule-associated protein. (558 aa)

Predicted Functional Partners:

ENSXCOP00000020027

0.533

Gak

0.444

ENSXCOP00000017895

0.416

Gsk3b

0.416

Your Current Organism:

Xiphophorus couchianus

NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXCOP00000002021	ENSXCOP00000017895	ENSXCOP00000002021	ENSXCOP00000017895	Microtubule-associated protein.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.416
ENSXCOP00000002021	ENSXCOP00000020027	ENSXCOP00000002021	ENSXCOP00000020027	Microtubule-associated protein.	Cyclin-dependent kinase 5.	0.533
ENSXCOP00000002021	Gak	ENSXCOP00000002021	ENSXCOP00000012564	Microtubule-associated protein.	Uncharacterized protein.	0.444
ENSXCOP00000002021	Gsk3b	ENSXCOP00000002021	ENSXCOP00000025405	Microtubule-associated protein.	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	0.416
ENSXCOP00000017895	ENSXCOP00000002021	ENSXCOP00000017895	ENSXCOP00000002021	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.416
ENSXCOP00000017895	ENSXCOP00000020027	ENSXCOP00000017895	ENSXCOP00000020027	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5.	0.559
ENSXCOP00000017895	Gak	ENSXCOP00000017895	ENSXCOP00000012564	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.429
ENSXCOP00000020027	ENSXCOP00000002021	ENSXCOP00000020027	ENSXCOP00000002021	Cyclin-dependent kinase 5.	Microtubule-associated protein.	0.533
ENSXCOP00000020027	ENSXCOP00000017895	ENSXCOP00000020027	ENSXCOP00000017895	Cyclin-dependent kinase 5.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.559
ENSXCOP00000020027	Gak	ENSXCOP00000020027	ENSXCOP00000012564	Cyclin-dependent kinase 5.	Uncharacterized protein.	0.710
ENSXCOP00000020027	Gsk3b	ENSXCOP00000020027	ENSXCOP00000025405	Cyclin-dependent kinase 5.	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	0.559
Gak	ENSXCOP00000002021	ENSXCOP00000012564	ENSXCOP00000002021	Uncharacterized protein.	Microtubule-associated protein.	0.444
Gak	ENSXCOP00000017895	ENSXCOP00000012564	ENSXCOP00000017895	Uncharacterized protein.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.429
Gak	ENSXCOP00000020027	ENSXCOP00000012564	ENSXCOP00000020027	Uncharacterized protein.	Cyclin-dependent kinase 5.	0.710
Gak	Gsk3b	ENSXCOP00000012564	ENSXCOP00000025405	Uncharacterized protein.	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	0.429
Gsk3b	ENSXCOP00000002021	ENSXCOP00000025405	ENSXCOP00000002021	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.416
Gsk3b	ENSXCOP00000020027	ENSXCOP00000025405	ENSXCOP00000020027	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5.	0.559
Gsk3b	Gak	ENSXCOP00000025405	ENSXCOP00000012564	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.429