STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhf2Pleckstrin homology domain containing, family F (with FYVE domain) member 2. (244 aa)    
Predicted Functional Partners:
ENSXCOP00000008613
Pleckstrin homology domain containing, family H (with MyTH4 domain) member 2.
      
 0.533
Neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.519
Fam43a
Family with sequence similarity 43 member A.
      
 0.517
Smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.495
ENSXCOP00000003973
Uncharacterized protein.
    
 
 0.478
micu1
Mitochondrial calcium uptake 1.
   
 0.445
ENSXCOP00000016455
Mitochondrial calcium uptake 2.
   
 0.445
Plekhg1
DH domain-containing protein.
      
 0.438
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
      
 0.432
ENSXCOP00000008885
TOX high mobility group box family member 4 b.
      
 0.431
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.