STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000008272SRSF protein kinase 1a. (587 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.669
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.647
FOXC1
Forkhead box C1.
    
 
 0.535
ENSXCOP00000001954
Serine and arginine rich splicing factor 5b.
    
 
 0.512
ENSXCOP00000004106
Serine and arginine rich splicing factor 6a.
    
 
 0.512
Srsf5
Serine and arginine rich splicing factor 5a.
    
 
 0.512
SRSF4
Serine and arginine rich splicing factor 4.
    
 
 0.512
ENSXCOP00000011879
Small nuclear ribonucleoprotein 70 (U1).
    
 
 0.447
ENSXCOP00000006547
Uncharacterized protein.
    
 
 0.446
ENSXCOP00000007063
RNA binding motif protein 39b.
    
 
 0.445
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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