LOC114150344 protein (Xiphophorus couchianus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114150344

Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (287 aa)

Predicted Functional Partners:

ENSXCOP00000011004

0.638

ENSXCOP00000017195

0.534

C1r

0.534

ENSXCOP00000022180

0.522

ENSXCOP00000006293

0.501

Met

0.501

ENSXCOP00000013278

0.501

ENSXCOP00000013415

0.501

Mst1r

0.501

ENSXCOP00000013466

0.501

Your Current Organism:

Xiphophorus couchianus

NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1r	ENSXCOP00000006293	ENSXCOP00000025787	ENSXCOP00000006293	Peptidase S1 domain-containing protein.	Sema domain-containing protein.	0.501
C1r	ENSXCOP00000013278	ENSXCOP00000025787	ENSXCOP00000013278	Peptidase S1 domain-containing protein.	Sema domain-containing protein.	0.501
C1r	ENSXCOP00000013415	ENSXCOP00000025787	ENSXCOP00000013415	Peptidase S1 domain-containing protein.	Protein kinase domain-containing protein.	0.501
C1r	ENSXCOP00000013466	ENSXCOP00000025787	ENSXCOP00000013466	Peptidase S1 domain-containing protein.	Protein kinase domain-containing protein.	0.501
C1r	ENSXCOP00000017195	ENSXCOP00000025787	ENSXCOP00000017195	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.536
C1r	LOC114150344	ENSXCOP00000025787	ENSXCOP00000012477	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.534
C1r	Met	ENSXCOP00000025787	ENSXCOP00000006308	Peptidase S1 domain-containing protein.	Protein kinase domain-containing protein.	0.501
C1r	Mst1r	ENSXCOP00000025787	ENSXCOP00000013420	Peptidase S1 domain-containing protein.	Sema domain-containing protein.	0.501
ENSXCOP00000006293	C1r	ENSXCOP00000006293	ENSXCOP00000025787	Sema domain-containing protein.	Peptidase S1 domain-containing protein.	0.501
ENSXCOP00000006293	ENSXCOP00000013278	ENSXCOP00000006293	ENSXCOP00000013278	Sema domain-containing protein.	Sema domain-containing protein.	0.580
ENSXCOP00000006293	ENSXCOP00000013415	ENSXCOP00000006293	ENSXCOP00000013415	Sema domain-containing protein.	Protein kinase domain-containing protein.	0.693
ENSXCOP00000006293	ENSXCOP00000013466	ENSXCOP00000006293	ENSXCOP00000013466	Sema domain-containing protein.	Protein kinase domain-containing protein.	0.638
ENSXCOP00000006293	ENSXCOP00000017195	ENSXCOP00000006293	ENSXCOP00000017195	Sema domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.501
ENSXCOP00000006293	ENSXCOP00000022180	ENSXCOP00000006293	ENSXCOP00000022180	Sema domain-containing protein.	Peptidase S1 domain-containing protein.	0.501
ENSXCOP00000006293	LOC114150344	ENSXCOP00000006293	ENSXCOP00000012477	Sema domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.501
ENSXCOP00000006293	Met	ENSXCOP00000006293	ENSXCOP00000006308	Sema domain-containing protein.	Protein kinase domain-containing protein.	0.677
ENSXCOP00000006293	Mst1r	ENSXCOP00000006293	ENSXCOP00000013420	Sema domain-containing protein.	Sema domain-containing protein.	0.580
ENSXCOP00000011004	LOC114150344	ENSXCOP00000011004	ENSXCOP00000012477	Fibronectin type III domain containing 7a.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.638
ENSXCOP00000013278	C1r	ENSXCOP00000013278	ENSXCOP00000025787	Sema domain-containing protein.	Peptidase S1 domain-containing protein.	0.501
ENSXCOP00000013278	ENSXCOP00000006293	ENSXCOP00000013278	ENSXCOP00000006293	Sema domain-containing protein.	Sema domain-containing protein.	0.580