STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppp1r42Protein phosphatase 1, regulatory subunit 42. (301 aa)    
Predicted Functional Partners:
ENSXCOP00000023626
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
 0.979
Cops2
COP9 signalosome subunit 2.
   
 0.977
COPS6
COP9 signalosome subunit 6.
   
 0.976
ENSXCOP00000002552
COP9 signalosome subunit 3.
   
 0.974
ENSXCOP00000021615
COP9 signalosome subunit 8.
   
 0.973
ENSXCOP00000014358
G protein pathway suppressor 1.
   
 0.971
cops7a
COP9 constitutive photomorphogenic homolog subunit 7A.
    
 0.969
ENSXCOP00000006170
Cullin 2; Belongs to the cullin family.
   
 0.918
LOC114156812
Ubiquitin-like domain-containing protein.
   
 0.917
NEDD8
NEDD8 ubiquitin like modifier.
   
 0.917
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.