STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000015701Serine/arginine repetitive matrix 1. (858 aa)    
Predicted Functional Partners:
RANBP2
RAN binding protein 2.
   
 0.977
ENSXCOP00000000151
Cwf21 domain-containing protein.
   
 0.975
ENSXCOP00000024168
Aly/REF export factor.
    
 0.963
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.951
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.944
ENSXCOP00000022328
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.936
ENSXCOP00000024898
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.936
Tcerg1
Uncharacterized protein.
   
 0.928
ENSXCOP00000002801
RNA binding motif protein 25b.
   
 0.924
RBM25
RNA binding motif protein 25.
   
 0.924
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.