STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000017816DUF3504 domain-containing protein. (409 aa)    
Predicted Functional Partners:
ENSXCOP00000024525
Uncharacterized protein.
 
 
 
 0.566
Mib1
Mindbomb E3 ubiquitin protein ligase 1.
   
  0.545
Rnaseh2b
Ribonuclease H2, subunit B.
      
 0.436
Sgsm3
Small G protein signaling modulator 3.
     
 0.431
ENSXCOP00000003281
WD repeat domain 90.
   
 0.424
ENSXCOP00000003313
OTU deubiquitinase 3.
    
 
 0.413
ENSXCOP00000015829
C2H2-type domain-containing protein.
   
 0.413
ENSXCOP00000026949
Ubiquilin 4.
    
 0.412
ENSXCOP00000026957
Peptidylprolyl isomerase.
    
 0.408
ENSXCOP00000011612
Myb-like, SWIRM and MPN domains 1.
   
 0.401
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.