STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000018273DEF6 guanine nucleotide exchange factor c. (587 aa)    
Predicted Functional Partners:
ENSXCOP00000006293
Sema domain-containing protein.
   
 0.550
Met
Protein kinase domain-containing protein.
   
 0.550
ENSXCOP00000013278
Sema domain-containing protein.
   
 0.550
ENSXCOP00000013415
Protein kinase domain-containing protein.
   
 0.550
Mst1r
Sema domain-containing protein.
   
 0.550
ENSXCOP00000013466
Protein kinase domain-containing protein.
   
 0.550
Dab2ip
PH domain-containing protein.
    
 0.438
ENSXCOP00000005641
Synaptic Ras GTPase activating protein 1b.
    
 0.438
ENSXCOP00000015305
RAS protein activator like 3.
    
 0.438
ENSXCOP00000015562
DUF3498 domain-containing protein.
    
 0.438
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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