STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000023082ISY1 splicing factor homolog. (115 aa)    
Predicted Functional Partners:
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.999
prpf19
Pre-mRNA processing factor 19.
    
 0.999
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 
 0.997
prpf8
Pre-mRNA processing factor 8.
    
 
 0.997
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.997
Eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.997
ENSXCOP00000023761
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.996
Plrg1
Pleiotropic regulator 1.
    
 
 0.995
Snw1
SNW domain containing 1.
    
 0.992
Rbm22
RNA binding motif protein 22.
   
 0.991
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.