STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUNDC1RUN domain containing 1. (559 aa)    
Predicted Functional Partners:
ENSXCOP00000023960
Si:ch211-131k2.3.
      
 0.635
vps51
VPS51 subunit of GARP complex.
   
  
 0.563
Vps53
VPS53 subunit of GARP complex.
      
 0.530
ENSXCOP00000016099
VPS54 subunit of GARP complex.
      
 0.465
ENSXCOP00000022989
TATA element modulatory factor 1.
      
 0.463
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.459
Vps52
VPS52 subunit of GARP complex.
      
 0.448
GCC2
GRIP domain-containing protein.
      
 0.414
Unc79
Uncharacterized protein.
      
 0.404
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.