STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000025430Uncharacterized protein. (383 aa)    
Predicted Functional Partners:
ENSXCOP00000001143
CHDCT2 domain-containing protein.
 
  
 0.945
ENSXCOP00000000988
Chromodomain helicase DNA binding protein 3.
 
   
 0.887
Mta2
Metastasis associated 1 family, member 2.
   
 0.838
ENSXCOP00000014535
Retinoblastoma binding protein 4.
   
 0.771
ENSXCOP00000023682
Retinoblastoma binding protein 4, like.
   
 0.771
Arid4a
Tudor domain-containing protein.
    
 0.726
mbd2
Methyl-CpG binding domain protein 2.
    
 0.704
MBD3
Methyl-CpG binding domain protein 3.
    
 0.684
Mta1
Metastasis associated 1.
   
 0.648
ENSXCOP00000007538
Metastasis associated 1 family, member 3.
   
 0.648
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.