STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0016Hypothetical protein. (672 aa)    
Predicted Functional Partners:
LGAS_0118
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
 
     0.766
LGAS_0119
PTS system IID component, Man family; TC 4.A.6.
 
     0.655
LGAS_0115
Galactosamine 6-phosphate isomerase AgaS.
 
     0.645
LGAS_0015
Hypothetical protein.
 
     0.558
LGAS_0147
Transcriptional regulator.
  
     0.532
LGAS_0742
Hypothetical protein.
  
     0.527
LGAS_0017
Putative Mg2+ Transporter-C (MgtC) Family.
       0.518
LGAS_0879
Uncharacterized conserved secreted or membrane protein.
  
     0.499
LGAS_0120
Phosphotransferase system, mannose/fructose-specific component IIA.
 
     0.450
LGAS_0117
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.
 
     0.431
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.