STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0077Transporter, YbiR family. (368 aa)    
Predicted Functional Partners:
LGAS_0078
Hypothetical protein; Belongs to the HesB/IscA family.
 
     0.623
LGAS_0133
Hypothetical protein.
  
     0.586
LGAS_0076
Hypothetical protein.
     
 0.557
htpX
Heat shock protein, Metallo peptidase, MEROPS family M48B; Belongs to the peptidase M48B family.
       0.531
LGAS_1236
Predicted membrane protein.
  
    0.505
LGAS_1701
Hypothetical protein.
  
     0.473
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
    0.465
LGAS_0097
Predicted secreted protein.
  
     0.449
LGAS_1039
Aminoglycoside N3'-acetyltransferase.
      
 0.424
LGAS_1703
Hypothetical protein.
  
     0.419
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.