STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0126Transcriptional regulator, GntR family. (245 aa)    
Predicted Functional Partners:
LGAS_0114
Transcriptional regulator, GntR family.
 
     0.786
LGAS_0127
Protein tyrosine phosphatase.
       0.774
LGAS_1435
Transcriptional regulator, GntR family.
  
     0.774
LGAS_0559
Transcriptional regulator, GntR family.
  
     0.768
LGAS_0534
Transcriptional regulator, GntR family.
  
     0.758
LGAS_1426
Transcriptional regulator.
  
     0.688
LGAS_0128
Universal stress protein UspA related nucleotide-binding protein.
  
  
 0.537
LGAS_0396
AraC-like transcriptional regulator (HTH and ligand binding domain).
  
  
 0.476
LGAS_0398
PTS system sucrose-specific IIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.
  
  
 0.411
LGAS_0535
PTS system beta-glucoside-specific EIIBCA component family protein; TC 4.A.1; TC 4.A.1; TC 4.A.1.
  
  
 0.411
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.