STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0222Trehalose-6-phosphate hydrolase. (538 aa)    
Predicted Functional Partners:
LGAS_0219
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; TC 3.A.1.1.-.
  
  
 0.709
LGAS_0398
PTS system sucrose-specific IIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.
  
  
 0.678
LGAS_0535
PTS system beta-glucoside-specific EIIBCA component family protein; TC 4.A.1; TC 4.A.1; TC 4.A.1.
 
  
 0.678
LGAS_1669
Phosphotransferase system, EIIC; TC 4.A.1.2.6; TC 4.A.1.2.6; TC 4.A.1.2.6.
  
  
 0.678
LGAS_1755
PTS system, beta-glucoside-specific, IIABC component; TC 4.A.1.2.5; TC 4.A.1.2.5; TC 4.A.1.2.5.
  
  
 0.678
LGAS_1778
PTS system sucrose-specific IIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.
  
  
 0.678
LGAS_0220
Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.
  
  
 0.673
LGAS_0221
Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.
  
  
 0.666
LGAS_0047
Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3.
  
 0.535
LGAS_0262
Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3.
  
 0.535
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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