STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0497PTS system IIC component, Gat family; TC 4.A.5. (472 aa)    
Predicted Functional Partners:
LGAS_0496
PTS system IIB component, Gat family; TC 4.A.5.
 
 
 0.991
LGAS_0495
PTS system IIA component, Gat family; TC 4.A.5.
 
 
 0.990
LGAS_0125
PTS system IIA component, Gat family; TC 4.A.5.
 
 
 0.971
LGAS_1361
Phosphotransferase system, HPr-related protein.
    
 0.907
lacB
Galactose-6-phosphate isomerase lacB subunit.
 
  
 0.717
LGAS_0494
Hypothetical protein.
 
     0.705
LGAS_0498
Hypothetical protein.
       0.694
pfkB
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.678
lacA
Galactose-6-phosphate isomerase lacA subunit.
 
  
 0.666
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
   
    0.642
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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