Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LGAS_0504Malolactic fermentation system transcription activator. (294 aa)    
Predicted Functional Partners:
LGAS_0505
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
    0.771
LGAS_0048
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.703
LGAS_0506
Di- and tricarboxylate transporter.
 
   
 0.597
LGAS_1868
Hypothetical protein.
  
     0.557
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.495
LGAS_1007
Fhu operon transcription regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.479
LGAS_0835
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.473
LGAS_1001
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.469
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.436
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.427
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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