STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0710DNA-binding response regulator, OmpR family (Rec-wHTH domains). (221 aa)    
Predicted Functional Partners:
LGAS_0711
Signal transduction histidine kinase.
 
 
 0.994
LGAS_1397
Signal transduction histidine kinase.
 
 0.971
LGAS_0709
RelA / SpoT (ppGpp synthetase/hydrolase) catalytic domain.
   
 0.956
LGAS_1734
Signal transduction histidine kinase.
 
 0.880
LGAS_1260
Signal transduction histidine kinase.
 
 0.876
walK
PAS/PAC sensor signal transduction histidine kinase.
 
 0.855
LGAS_0708
Predicted membrane protein.
       0.550
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.