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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0841Transcriptional regulator, xre family. (129 aa)    
Predicted Functional Partners:
LGAS_1524
Transcriptional regulator, xre family.
  
     0.612
LGAS_0122
Predicted membrane protein.
  
     0.590
LGAS_0400
Transcriptional regulator, xre family.
  
     0.585
LGAS_1262
Predicted integral membrane protein.
  
     0.580
LGAS_0044
Adhesion exoprotein.
 
     0.527
LGAS_0102
Immunity protein PlnI, membrane-bound protease CAAX family.
 
    0.520
LGAS_1748
Hypothetical protein.
  
     0.506
LGAS_0383
Hypothetical protein.
 
    0.504
LGAS_1105
Uncharacterized ABC transporter, permease component.
  
     0.501
LGAS_0532
Hypothetical protein.
  
    0.500
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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