Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LGAS_0899Restriction endonuclease S subunit. (396 aa)    
Predicted Functional Partners:
LGAS_0898
Type I restriction-modification system methyltransferase subunit.
 
 0.998
LGAS_0902
Type I site-specific restriction-modification system, R (restriction) subunit related helicase.
 
 
 0.959
LGAS_0900
Integrase; Belongs to the 'phage' integrase family.
 
  
 0.770
LGAS_0901
Restriction endonuclease S subunit.
 
    
0.695
LGAS_0903
Hypothetical protein.
     
 0.637
LGAS_0896
Superfamily II DNA/RNA helicase, SNF2 family.
       0.438
atpF
ATP synthase F0 subcomplex B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
 
 0.427
LGAS_0897
Hypothetical protein.
       0.412
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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